DNA Sequence Extraction

It extracts DNA sequences for genomic variants (in VCF) with user-defined window size (bp), and for genomic ranges (in BED), from the reference genome of 11 model organisms.
It also annotates the nearest splice sites to the given genomic variants, if the splice sites reside inside the extracted DNA sequences.

Protein Sequence Extraction

It extracts protein sequences for genomic variants (in VCF) with user-defined window size (aa).

Documentation

It provides webserver framework, input/output description, supported organism details, standalone programs, case study, and browser compatibility.


About Us

DeveloperPeng ZHANG (Ph.D.)    
ArtworkZhou YANG (B.A.)
AdvisorsYuval ITAN (Ph.D.), Bertrand BOISSON (Ph.D.), Laurent ABEL (Ph.D.)
Lab HeadJean-Laurent CASANOVA (M.D., Ph.D.)
LabSt. Giles Laboratory of Human Genetics of Infectious Diseases        
AddressThe Rockefeller University, 1230 York Avenue, New York, NY 10065, USA
Last UpdateMay 01, 2019
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