Extracts DNA/protein sequences for genomic variants in VCF format
It extracts DNA sequences for genomic variants (in VCF) with user-defined window size (bp), and for genomic ranges (in BED), from the reference genome of 11 model organisms.
It also annotates the nearest splice sites to the given genomic variants, if the splice sites reside inside the extracted DNA sequences.
It extracts protein sequences for genomic variants (in VCF) with user-defined window size (aa).
It provides webserver framework, input/output description, supported organism details, standalone programs, case study, and browser compatibility.
|Developer||Peng ZHANG (Ph.D.)|
|Artwork||Zhou YANG (B.A.)|
|Advisors||Yuval ITAN (Ph.D.), Bertrand BOISSON (Ph.D.), Laurent ABEL (Ph.D.)|
|Lab Head||Jean-Laurent CASANOVA (M.D., Ph.D.)|
|Lab||St. Giles Laboratory of Human Genetics of Infectious Diseases|
|Address||The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA|
|Last Update||May 01, 2019|